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<h3>
Chris Lamb pushed to branch master
at <a href="https://salsa.debian.org/reproducible-builds/diffoscope">Reproducible Builds / diffoscope</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/reproducible-builds/diffoscope/-/commit/6344b5af15c71ee5d906ab53070aedcffc49bf15">6344b5af</a></strong>
<div>
<span>by Chris Lamb</span>
<i>at 2020-03-05T11:30:17-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Prevent a traceback when comparing two .rdx files directly as get_member will return a file even if the file is missing and not raise a KeyError exception; we therefore explicitly test for the existence of the file.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/reproducible-builds/diffoscope/-/commit/5840c56f5591f6eed4426b8a79cd5cd8661f2be5">5840c56f</a></strong>
<div>
<span>by Chris Lamb</span>
<i>at 2020-03-05T11:30:17-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Don't allow errors within Rscript deserialisation cause the entire operation to fail, for example if an external library cannot be loaded. (Closes: reproducible-builds/diffoscope#91)
</pre>
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<h4>1 changed file:</h4>
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<li class="file-stats">
<a href="#dc22e057f87c5c203d14066645d7164eb8a00499">
diffoscope/comparators/rdata.py
</a>
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<h4>Changes:</h4>
<li id="dc22e057f87c5c203d14066645d7164eb8a00499">
<a href="https://salsa.debian.org/reproducible-builds/diffoscope/-/compare/b1a71c2f62ada4b3847f206231f89f19a0d16733...5840c56f5591f6eed4426b8a79cd5cd8661f2be5#dc22e057f87c5c203d14066645d7164eb8a00499"><strong>diffoscope/comparators/rdata.py</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -38,6 +38,14 @@ RDS_HEADERS = {</td>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="python"><span class="n" style="color: #333;">DUMP_RDB</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">rb</span><span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="python"><span class="s" style="color: #d14;">hideOutput = lazyLoad(commandArgs(TRUE));</span></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="python"><span class="s" style="color: #d14;">safeDeparse <- function(obj) {</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="python"><span class="s" style="color: #d14;"> tryCatch({</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="python"><span class="s" style="color: #d14;"> deparse(obj)</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="python"><span class="s" style="color: #d14;"> }, error = function (e) {</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="python"><span class="s" style="color: #d14;"> (deparse(e))</span></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="python"><span class="s" style="color: #d14;"> });</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="python"><span class="s" style="color: #d14;">}</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="python"><span class="s" style="color: #d14;">for (x in ls(all.names = TRUE, sorted = TRUE)) {</span></span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="python"><span class="s" style="color: #d14;"> obj = get(x)</span></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="python"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="55" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -47,11 +55,11 @@ for (x in ls(all.names = TRUE, sorted = TRUE)) {</td>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="python"><span class="s" style="color: #d14;"> cat("</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">{</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">", sep = "");</span></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="python"><span class="s" style="color: #d14;"> for (y in ls(obj, all.names = TRUE, sorted = TRUE)) {</span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="python"><span class="s" style="color: #d14;"> obj2 = get(y, envir = obj);</span></span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="python"><span class="s" style="color: #d14;"> cat(sprintf(" </span><span class="se" style="color: #d14;">\"</span><span class="si" style="color: #d14;">%</span><span class="s" style="color: #d14;">s</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;"> = </span><span class="se" style="color: #d14;">\"</span><span class="si" style="color: #d14;">%</span><span class="s" style="color: #d14;">s</span><span class="se" style="color: #d14;">\"\n</span><span class="s" style="color: #d14;">", y, <span class="idiff left right">d</span>eparse(obj2)), sep = "");</span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="python"><span class="s" style="color: #d14;"> cat(sprintf(" </span><span class="se" style="color: #d14;">\"</span><span class="si" style="color: #d14;">%</span><span class="s" style="color: #d14;">s</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;"> = </span><span class="se" style="color: #d14;">\"</span><span class="si" style="color: #d14;">%</span><span class="s" style="color: #d14;">s</span><span class="se" style="color: #d14;">\"\n</span><span class="s" style="color: #d14;">", y, <span class="idiff left right">safeD</span>eparse(obj2)), sep = "");</span></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="python"><span class="s" style="color: #d14;"> }</span></span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="python"><span class="s" style="color: #d14;"> cat("}</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">");</span></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="python"><span class="s" style="color: #d14;"> } else {</span></span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="python"><span class="s" style="color: #d14;"> for (line in <span class="idiff left right">d</span>eparse(obj))</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="python"><span class="s" style="color: #d14;"> for (line in <span class="idiff left right">safeD</span>eparse(obj))</span></span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="python"><span class="s" style="color: #d14;"> cat(line, "</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">", sep = "");</span></span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="python"><span class="s" style="color: #d14;"> }</span></span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="python"><span class="s" style="color: #d14;"> cat("</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">");</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -86,17 +94,17 @@ def get_module_path_for_rdb(rdb):</td>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Calculate location of parallel .rdx file</span></span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="python"> <span class="n" style="color: #333;">rdx_name</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"{}.rdx"</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">format</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">splitext</span><span class="p">(</span><span class="n" style="color: #333;">rdb</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">name</span><span class="p">)[</span><span class="mi" style="color: #099;">0</span><span class="p">])</span></span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="python"> <span class="k" style="font-weight: 600;"><span class="idiff left">try</span></span><span class="p"><span class="idiff right">:</span></span></span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="python"> <span class="idiff left"> </span><span class="c1" style="color: #998; font-style: italic;"><span class="idiff right"># Query the container for the full path (eg. `./path/to/foo.rdx`)...</span></span></span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="python"><span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">rdx</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">rdb</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">container</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">get_member</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">rdx_name</span></span><span class="p"><span class="idiff right">)</span></span></span>
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="python"> <span class="k" style="font-weight: 600;"><span class="idiff left">except</span></span><span class="idiff"> </span><span class="nb" style="color: #0086b3;"><span class="idiff right">KeyError</span></span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="python"> <span class="k" style="font-weight: 600;"><span class="idiff left">try</span></span><span class="p"><span class="idiff right">:</span></span></span>
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="python"> <span class="idiff left"> </span><span class="c1" style="color: #998; font-style: italic;"><span class="idiff right"># ... falling back to looking in the same directory for when</span></span></span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="python"> <span class="idiff left"> </span><span class="c1" style="color: #998; font-style: italic;"><span class="idiff right"># comparing two .rdb files directly</span></span></span>
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="python"><span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">rdx</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">rdb</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">container</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">get_member</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">os</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">path</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">basename</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">rdx_name</span></span><span class="p"><span class="idiff right">))</span></span></span>
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="python"> <span class="idiff left"> </span><span class="k" style="font-weight: 600;"><span class="idiff">except</span></span><span class="idiff"> </span><span class="nb" style="color: #0086b3;"><span class="idiff right">KeyError</span></span><span class="p">:</span></span>
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98
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="python"> <span class="idiff left right"> </span><span class="c1" style="color: #998; font-style: italic;"># Corresponding .rdx does not exist</span></span>
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="python"> <span class="idiff left right"> </span><span class="k" style="font-weight: 600;">return</span></span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"><span class="idiff left right"># Query the container for the full path (eg. `./path/to/foo.rdx`)...</span></span></span>
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left">rdx</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">rdb</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">container</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">get_member</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">rdx_name</span></span><span class="p"><span class="idiff right">)</span></span></span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="python"></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="python"> <span class="k" style="font-weight: 600;"><span class="idiff left">if</span></span><span class="idiff"> </span><span class="ow" style="font-weight: 600;"><span class="idiff">not</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">os</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">path</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">exists</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">rdx</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">path</span></span><span class="p"><span class="idiff right">)</span>:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"><span class="idiff left right"># ... falling back to looking in the same directory for when</span></span></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"><span class="idiff left right"># comparing two .rdb files directly</span></span></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left">rdx</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">rdb</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">container</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">get_member</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">os</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">path</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">basename</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">rdx_name</span></span><span class="p"><span class="idiff right">))</span></span></span>
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="python"></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="python"> <span class="k" style="font-weight: 600;"><span class="idiff left">if</span></span><span class="idiff"> </span><span class="ow" style="font-weight: 600;"><span class="idiff">not</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">os</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">path</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">exists</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">rdx</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">path</span></span><span class="p"><span class="idiff right">)</span>:</span></span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Corresponding .rdx does not exist</span></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span></span>
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100
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108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="python"></span>
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101
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109
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="python"> <span class="n" style="color: #333;">temp_dir</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_temporary_directory</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">name</span></span>
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102
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110
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="python"> <span class="n" style="color: #333;">prefix</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">temp_dir</span><span class="p">,</span> <span class="s" style="color: #d14;">"temp"</span><span class="p">)</span></span>
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